EXAMPLE DATASETS

The companion data package CardinalWorkflows contains the following example datasets (saved as R data files):

They are available as a separate download on the CardinalWorkflows releases page, and are included in the CardinalWorkflows package when downloaded from Bioconductor (see Installation instructions).

*Available only on the Github release of CardinalWorkflows.

OTHER PUBLIC DATASETS

The imzML website has several publicly available datasets in imzML format.

Note that Cardinal currently only supports the “continuous” format.

After downloading a dataset, start R and load Cardinal by typing:

library(Cardinal)


To load the dataset in Cardinal, type (for example):

data <- readMSIData("path/to/folder/file.imzML")